GeneDrive.AdultMortalityAbiodun
— TypeData for μ_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Pupa. Source: Abiodun et al (2016).
GeneDrive.AdultMortalityMoustaid
— TypeData for μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Male, Female. Source: El Moustaid et al (2019).
GeneDrive.AdultMortalityRossi
— TypeData for μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Male, Female. Source: Rossi et al (2014).
GeneDrive.AedesAegypti
— Typestruct AedesAegypti <: Species end
Data for Aedes Aegypti mosquito. Disease vector.
GeneDrive.AedesAlbopictus
— Typestruct AedesAlbopictus <: Species end
Data for Aedes Albopictus mosquito. Disease vector.
GeneDrive.AnophelesArabiensis
— Typestruct AnophelesArabiensis <: Species end
Data for Anopheles Arabiensis mosquito. Disease vector.
GeneDrive.AnophelesGambiae
— Typestruct AnophelesGambiae <: Species end
Data for Anopheles Gambiae mosquito. Disease vector.
GeneDrive.ConstantTemperature
— Typemutable struct ConstantTemperature <: Temperature end
Data for simulation that features a single constant temperature in °C. Generated internally.
Arguments
value::Float64
: Temperature value in °C; re-used by model at every time step.
GeneDrive.Density
— Typemutable struct Density{D <: DensityDependence}
model::Type{D}
param::Float64
end
Data for density dependence model.
Arguments
model::Type{D}
: User-selected density dependence formulation. IncludesLogisticDensity
,LinearDensity
, andNoDensity
.param::Float64
: Calculated internally byinit
function.
GeneDrive.Drive
— Typemutable struct Drive{G <: Genotype}
genotype::Type{G}
likelihood_slice::Array{Float64,2}
s::Float64
τ::Array{Float64,2}
ϕ::Float64
ξ_m::Float64
ξ_f::Float64
ω::Float64
β::Float64
η::Float64
wildtype::Int64
modified::Int64
end
Data for individual genotypes.
Fields
genotype::Type{G}
: Single genotype.likelihood_slice::Array{Float64,2}
: Offspring likelihoods for this genotype.s::Float64
: Multiplicative fertility modifier.τ::Array{Float64,2}
: Offspring viability.ϕ::Float64
: Male to female emergence ratio.ξ_m::Float64
: Male pupatory success.ξ_f::Float64
: Female pupatory success.ω::Float64
: Multiplicative adult mortality modifier.β::Float64
: Female fecundity.η::Float64
: Male mating fitness.wildtype::Int64
: Boolean demarcates homozygous recessive.modified::Int64
: Boolean demarcates homozygous modified.
GeneDrive.Egg
— Typestruct Egg <: LifeStage end
Egg
life stage. Applicable to holometabolous (complete) or hemimetabolous (partial) metamorphosing insect species.
GeneDrive.EggDurationAbiodun
— TypeData for q_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Egg. Source: Abiodun et al (2016).
GeneDrive.EggDurationMoustaid
— TypeData for q_temperature_response
. Species
: AedesAegypti, LifeStage
: Egg. Source: El Moustaid et al (2019).
GeneDrive.EggDurationRossi
— Typemutable struct EggDurationRossi <: TemperatureResponse
a::Float64
b::Float64
c::Float64
d::Float64
e::Float64
f::Float64
end
Data for q_temperature_response
. Species
: AedesAegypti, LifeStage
:, egg stage. Source: Rossi et al (2014).
GeneDrive.EggMortalityAbiodun
— TypeData for μ_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Egg. Source: Abiodun et al (2016).
GeneDrive.EggMortalityMoustaid
— TypeData for μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Egg. Source: El Moustaid et al (2019).
GeneDrive.EggMortalityRossi
— Typemutable struct EggMortalityRossi <: TemperatureResponse
a::Float64
b::Float64
end
Data for μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Egg. Source: Rossi et al (2014).
Arguments
a::Float64
: Death rate at low temperatures, validation range:(0, nothing)
b::Float64
: Influence factor of temperature, validation range:(0, nothing)
GeneDrive.ExogenousInputs
— Typestruct ExogenousInputs
intervention::Dict{Symbol, Dict}
temperature::Dict{Symbol, Float64}
function ExogenousInputs(;
intervention = Dict{Symbol, Dict}(),
temperature = Dict{Symbol, Float64}())
new(intervention,
temperature)
end
end
Data for perturbations to the simulated system, including (1) biological control interventions and (2) externally defined temperature series/shocks.
GeneDrive.ExogenousInputs
— MethodExogenousInputs(network::Network)
Return allocated space for exogenous inputs to a Network
.
GeneDrive.ExogenousInputs
— MethodExogenousInputs(node::Node)
Return allocated space for exogenous inputs to Node
.
GeneDrive.Female
— Typestruct Female <: LifeStage end
Female life stage. Applicable to holometabolous (complete) or hemimetabolous (partial) metamorphosing insect species.
GeneDrive.Genetics
— Typemutable struct Genetics
all_genotypes::Array{Drive{<:Genotype}}
likelihood::Array{Float64, 3}
S::Vector{Float64}
Τ::Array{Float64,3}
Φ::Vector{Float64}
Ξ_m::Vector{Float64}
Ξ_f::Vector{Float64}
Ω::Vector{Float64}
Β::Vector{Float64}
Η::Vector{Float64}
all_wildtypes::Vector{Int64}
all_modified::Vector{Int64}
function Genetics(all_genotypes::Array{Drive{<:Genotype}})
gN = length(all_genotypes)
likelihood = Array{Float64, 3}(undef, gN, gN, gN)
S = Vector{Float64}(undef, gN)
Τ = Array{Float64,3}(undef, gN, gN, gN)
Φ = Vector{Float64}(undef, gN)
Ξ_m = Vector{Float64}(undef, gN)
Ξ_f = Vector{Float64}(undef, gN)
Ω = Vector{Float64}(undef, gN)
Β = Vector{Float64}(undef, gN)
Η = Vector{Float64}(undef, gN)
all_wildtypes = Vector{Int64}(undef, gN)
all_modified = Vector{Int64}(undef, gN)
for (index, g) in enumerate(all_genotypes)
likelihood[:,:,index] = g.likelihood_slice
S[index] = g.s
Τ[:,:,index] = g.τ
Φ[index] = g.ϕ
Ξ_m[index] = g.ξ_m
Ξ_f[index] = g.ξ_f
Ω[index] = g.ω
Β[index] = g.β
Η[index] = g.η
all_wildtypes[index] = g.wildtype
all_modified[index] = g.modified
end
new(all_genotypes, likelihood, S, Τ, Φ, Ξ_m, Ξ_f, Ω, Β, Η,
all_wildtypes, all_modified)
end
end
Data for all genotypes in a population.
Fields
all_genotypes::Array{Drive{<:Genotype}}
: All genotypes in a population.likelihood::Array{Float64, 3}
: Offspring likelihoods per genotype.S::Vector{Float64}
: Multiplicative fertility modifier genedata_splitdriveper genotype, applied to oviposition.Τ::Array{Float64,3}
: Offspring viability per genotype, applied to oviposition.Φ::Vector{Float64}
: Male to female emergence ratio per genotype.Ξ_m::Vector{Float64}
: Male pupatory success per genotype.Ξ_f::Vector{Float64}
: Female pupatory success per genotype.Ω::Vector{Float64}
: Multiplicative adult mortality modifier per genotype.Β::Vector{Float64}
: Female fecundity per genotype (count of eggs laid).Η::Vector{Float64}
: Male mating fitness per genotype.all_wildtypes::Vector{Int64}
: Collect homozygous wildtype booleans.all_modified::Vector{Int64}
: Collect homozygous modified booleans.
GeneDrive.Larva
— Typestruct Larva <: LifeStage end
Larva
life stage. Also referred to as "nymph" life stage. Applicable to holometabolous (complete) or hemimetabolous (partial) metamorphosing insect species.
GeneDrive.LarvaDurationAbiodun
— TypeData for q_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Larva. Source: Abiodun et al (2016).
GeneDrive.LarvaDurationMoustaid
— TypeData for q_temperature_response
. Species
: AedesAegypti, LifeStage
: Larva. Source: El Moustaid et al (2019).
GeneDrive.LarvaDurationRossi
— TypeData for q_temperature_response
. Species
: AedesAegypti, LifeStage
: Larva. Source: Rossi et al (2014).
GeneDrive.LarvaMortalityAbiodun
— TypeData for μ_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Larva. Source: Abiodun et al (2016).
GeneDrive.LarvaMortalityMoustaid
— TypeData for μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Larva. Source: El Moustaid et al (2019).
GeneDrive.LarvaMortalityRossi
— TypeData for μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Larva. Source: Rossi et al (2014).
GeneDrive.LinearDensity
— Typestruct LinearDensity <: DensityDependence end
Density dependence model of type LinearDensity
.
GeneDrive.LogisticDensity
— Typestruct LogisticDensity <: DensityDependence end
Density dependence model of type LogisticDensity
.
GeneDrive.Male
— Typestruct Male <: LifeStage end
Male
life stage. Applicable to holometabolous (complete) or hemimetabolous (partial) metamorphosing insect species.
GeneDrive.Network
— Typestruct Network
name::Symbol
nodes::DataStructures.OrderedDict{Symbol,Node}
migration::DataStructures.OrderedDict{DataType},Array{Matrix{Float64},2}}
locations_key_map
end
Data for multiple interconnected spatial nodes.
Arguments
name::Symbol
: Name of network, usually location-relevant.nodes::DataStructures.OrderedDict{Symbol,Node}
: Dictionary of data for nodes included in network (metapopulation).migration::DataStructures.OrderedDict{DataType}, Array{Matrix{Float64},2}}
: Data defining species, genotype, and stage-specific transition rates. Entries default to zero.locations_key_map
: Mapping of node location information. Used to assign transition rates.
GeneDrive.Network
— MethodNetwork(name::Symbol, nodes::DataStructures.OrderedDict{Symbol,Node}...)
Return Network
instance containing specified metapopulation information.
GeneDrive.NoDensity
— Typestruct NoDensity <: DensityDependence end
Density dependence model of type NoDensity
.
GeneDrive.NoResponse
— Typemutable struct NoResponse <: TemperatureResponse
baseline_value::Float64
end
Data for model without temperature response.
Arguments:
baseline_value::Float64
: Literature-sourced (rather than dynamically calculated) vital rate parameter.
GeneDrive.Node
— Typemutable struct Node
name::Symbol
organisms::DataStructures.OrderedDict{Type{<:Species}, Organism}
temperature::Temperature
location::Tuple{Float64,Float64}
end
Data for a single spatial node.
Arguments
name::Symbol
: Name of node, usually location-relevant.organisms::DataStructures.OrderedDict{Type{<:Species}, Organism}
: Dictionary containing data for all species inhabiting node.temperature::Temperature
: Climatic specification for temperature.location::Tuple{Float64,Float64}
: Geographic location denoted by coordinates.
GeneDrive.Organism
— Typemutable struct Organism{S <: Species}
gene_data::Genetics
all_stages::DataStructures.OrderedDict{Type{<:LifeStage}, Stage}
end
Generic data container for species-specific genetic and life stage information.
Arguments
gene_data::Genetics
: Species and modification-specific genetic data.all_stages::DataStructures.OrderedDict{Type{<:LifeStage}, Stage}
: Dictionary of wildtype species-specific life stage data.
GeneDrive.ProportionalRelease
— Typemutable struct ProportionalRelease <: Intervention
node::Symbol
organism::Type{<:Species}
stage::Type{<:LifeStage}
gene_index::Int64
times::Vector{Float64}
proportion::Float64
callbacks::Vector
adults_counting::String
end
Data for biological control interventions predicated on releasing modified organisms.
Arguments
node::Symbol
:Node
where releases occur.organism::Type{<:Species}
: Species of organism being released.stage::Type{<:LifeStage}
:LifeStage
of organism being released.gene_index::Int64
: Genotype being released to implement the intervention.times::Vector{Float64}
: Release time points.proportion::Float64
: Proportion of modified organisms released during each time period.callbacks::Vector
adults_to_count::String
: TheLifeStage
of the standing population against which to measure proportional release size. Choices includeMale
,Female
, orAll
.
GeneDrive.ProportionalRelease
— MethodProportionalRelease(node::Node, organism, stage::Type{T}, gene_index, times::Vector, proportion::Float64, adult_counting::String) where T <: LifeStage
Return ProportionalRelease
object specifying details of biological control intervention where release size is predicated on real-time wild population level.
GeneDrive.Pupa
— Typestruct Pupa <: LifeStage end
Pupa
life stage. Applicable to holometabolous (complete) metamorphosing insect species.
GeneDrive.PupaDurationAbiodun
— TypeData for q_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Pupa. Source: Abiodun et al (2016).
GeneDrive.PupaDurationMoustaid
— TypeData for q_temperature_response
. Species
: AedesAegypti, LifeStage
: Pupa. Source: El Moustaid et al (2019).
GeneDrive.PupaDurationRossi
— TypeData for q_temperature_response
. Species
: AedesAegypti, LifeStage
: Pupa. Source: Rossi et al (2014) and Poletti et al (2011) Table 1.
GeneDrive.PupaMortalityAbiodun
— TypeData for μ_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Pupa. Source: Abiodun et al (2016).
GeneDrive.PupaMortalityMoustaid
— TypeData for μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Pupa. Source: El Moustaid et al (2019).
GeneDrive.PupaMortalityRossi
— TypeData for μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Pupa. Source: Rossi et al (2014).
GeneDrive.Release
— Typemutable struct Release <: Intervention
node::Symbol
organism::Type{<:Species}
stage::Type{<:LifeStage}
gene_index::Int64
times::Vector{Float64}
values::Vector{Float64}
callbacks::Vector
end
Data for biological control interventions predicated on releasing modified organisms. Applicable to both suppression and replacement techniques.
Arguments
node::Symbol
:Node
where releases occur.organism::Type{<:Species}
: Species of organism being released.stage::Type{<:LifeStage}
:Life stage
of organism being released.gene_index::Int64
: Genotype being released to implement the intervention.times::Vector{Float64}
: Release time points.values::Union{Float64, Vector{Float64}}
: Number of modified organisms released during each time period. Variably sized releases permitted.callbacks::Vector
GeneDrive.Release
— MethodRelease(node::Node, organism, stage, gene, times::Vector, fixed_release::Float64)
Return Release
object specifying details of biological control intervention where release size is fixed over time.
GeneDrive.Release
— MethodRelease(node::Node, organism, stage::Type{T}, gene, times::Vector, variable_release::Vector{Float64}) where T <: LifeStage
Return Release
object specifying details of biological control intervention where release size is variable over time.
GeneDrive.ReleaseStrategy
— Typemutable struct ReleaseStrategy
release_this_gene_index::Union{Nothing, Int64}=nothing
release_this_life_stage=nothing
release_location_force::Union{Nothing, Bool}=nothing
release_start_time::Union{Nothing,Int64}=nothing
release_end_time::Union{Nothing,Int64}=nothing
release_time_interval::Int64=1
release_size_min_per_timestep::Union{Int64, Float64}=0.0
release_size_max_per_timestep::Union{Int64,Float64}=9e9
release_max_over_timehorizon::Union{Int64,Float64}=9e9
end
Data defining the operational constraints for each node.
Arguments
release_this_gene_index
: Gene index to be released. Generally defined byget_homozygous_modified
.release_this_life_stage
: Lifestage to be released. Varies according to genetic technology.release_location_force
: Specify locations where releases are obligatory; only applicable when decision model is being run as an MINLP.release_start_time
: Timestep (day) that releases are permitted to start.release_end_time
: Timestep (day) that releases are required to end.release_time_interval
: Minimum timestep interval (in days) permitted for releases.release_size_min_per_timestep
: Minimum number of organisms that may be released on a single day.release_size_max_per_timestep
: Maximum number of organisms that may be released on a single day.release_max_over_timehorizon
: Maximum number of organisms that may be released over the problem horizon.
GeneDrive.ScenarioTemperature
— Typemutable struct ScenarioTemperature <: Temperature end
Data for simulation that uses ensembles of temperature time series in °C.
Arguments
data::Matrix{Float64}
: Array of ensemble members, each column of which is a time series of temperature values in °C.probability::Vector{Float64}
: Vector of probabilities with which given scenarios are expected to occur (one probability applicable per ensemble member).selected_scenario::Int
: Index to run dynamic model over selected scenarios;Int
argument required. For decision model, usenothing
.
GeneDrive.SinusoidalTemperature
— Typemutable struct SinusoidalTemperature <: Temperature
a::Float64
b::Int64
c::Int64
d::Float64
end
Data for simulation that features sinusoidal temperature fluctuation in °C. Uses cosine
implementation applicable to the Southern Hemisphere. Generated internally.
Arguments
a::Float64
: Amplitude.b::Float64
: Periodicity coefficient.c::Float64
: Time period (days).d::Float64
: Mean.
GeneDrive.Stage
— Typemutable struct Stage{L <: LifeStage}
μ_temperature_response::TemperatureResponse
q_temperature_response::TemperatureResponse
n::Union{Nothing, Int64}
density::Density{<: DensityDependence}
dependency::Union{Nothing, Type{<:LifeStage}}
N0::Int64
end
Data for life stages. Applies to any organism represented by stage-structured population equations.
Arguments
μ_temperature_response::TemperatureResponse
: Mortality rate. Responsive to temperature.q_temperature_response::TemperatureResponse
: Developmental rate. 1/total time (days or portion thereof) spent in stage. Responsive to temperature.n::Union{Nothing, Int64}
: Number of bins allocated to stage (parameter, Erlang distribution).density::Density
: Specify density dependence model.dependency::Union{Nothing, Type{<:LifeStage}}
: Organism internal reference, do not modify.N0::Int64
: Initial stage-specific population count per node. Specify "0" for all stages exceptFemale
life stage.
GeneDrive.Stage
— MethodStage{Female}(μ::Float64, n::Int64, density, dependency, N0::Int64)
Return Female
life stage populated with input data. Not dynamically responsive to temperature. Applicable to holometabolous (complete) or hemimetabolous (partial) metamorphosing insect species.
GeneDrive.Stage
— MethodStage{Female}(μ::TemperatureResponse, n::Int64, density, dependency, N0::Int64)
Return Female
life stage populated with input data. Dynamically responsive to temperature. Applicable to holometabolous (complete) or hemimetabolous (partial) metamorphosing insect species.
GeneDrive.Stage
— MethodStage{L}(μ::Float64, n::Int64, density, dependency, N0::Int64) where {L <: LifeStage}
Return juvenile life stage populated with input data. Applicable to holometabolous (complete) or hemimetabolous (partial) metamorphosing insect species.
GeneDrive.Stage
— MethodStage{Male}(μ::Float64, n::Int64, density, dependency, N0::Int64)
Return Male
life stage populated with input data. Not dynamically responsive to temperature. Applicable to holometabolous (complete) or hemimetabolous (partial) metamorphosing insect species.
GeneDrive.Stage
— MethodStage{Male}(μ::TemperatureResponse, n::Int64, density, dependency, N0::Int64)
Return Male
life stage populated with input data. Dynamically responsive to temperature. Applicable to holometabolous (complete) or hemimetabolous (partial) metamorphosing insect species.
GeneDrive.TemperatureSeriesData
— Typemutable struct TemperatureSeriesData <: ExogenousChange
node::Symbol
times::Vector{Float64}
values::Vector{Float64}
set::diffeq.CallbackSet
end
Data for time series of temperature.
Arguments
node::Symbol
:Node
where temperature is realized.times::Vector{Float64}
: Time step (day) of realized temperature value.values::Vector{Float64}
: Temperature in °C.set::diffeq.CallbackSet
GeneDrive.TemperatureShockData
— Typemutable struct TemperatureShockData <: ExogenousChange
node::Symbol
times::Vector{Tuple{Float64, Float64}}
values::Union{Float64, Vector{Float64}}
set::diffeq.CallbackSet
end
Data for temperature shocks.
Arguments
node::Symbol
:Node
where temperature shock occurs.times::Vector{Tuple{Float64,Float64}}
: Vector of tuples defining shock start/stop time points. Multiple discrete shock periods may be included.values::Union{Float64, Vector{Float64}}
: Single fixed temperature value in °C or vector of variable temperature values in °C added to the baseline temperature during the specified time period. Multiple discrete temperature changes may be included; values may be positive or negative.set::diffeq.CallbackSet
GeneDrive.TemperatureShockData
— Methodfunction TemperatureShockData(node::Node, times::Vector{Tuple{Float64,Float64}}, fixed_shock::Float64)
Return TemperatureShockData
instance specifying data for fixed (all the same) shock values.
GeneDrive.TemperatureShockData
— MethodTemperatureShockData(node::Node, times::Vector{Tuple{Float64,Float64}}, variable_shock::Vector{Float64})
Return TemperatureShockData
instance specifying data for variable shock values.
GeneDrive.TimeSeriesTemperature
— Typemutable struct TimeSeriesTemperature <: Temperature end
Data for simulation that uses temperature time series in °C.
Arguments
value::Float64
: Time series of temperature values in °C.probability::Float64
: Probability with which timeseries expected to be observed.selected_scenario::Int
GeneDrive.assign_migration!
— Methodassign_migration!(network::Network, migration_data::Dict, species::Type{<:Species})
Return Network
instance with migration
field populated by user-specified transition rates.
Note to user:
- Input data must be formatted as a nested dictionary. First level denotes relevant life stage and gene, second level includes to/from nodes and transition rate.
- Stage and gene combinations not specified by input data retain a default transition rate of zero.
GeneDrive.compute_density
— Methodcompute_density(data::Density{LinearDensity}, stage)
Return the effect of LinearDensity
on life stage instance. Calculated each time step.
GeneDrive.compute_density
— Methodcompute_density(data::Density{LogisticDensity}, stage)
Return the effect of LogisticDensity
on life stage instance. Calculated each time step.
GeneDrive.compute_density
— Methodcompute_density(data::Density{NoDensity}, stage)
Return the effect of NoDensity
on life stage instance. Calculated each time step.
GeneDrive.count_genotypes
— Methodcount_genotypes(genetics::Genetics)
Return the total count of genotypes in the Genetics
object.
GeneDrive.count_genotypes
— Methodcount_genotypes(network::Network, node::Symbol, species::Type{<:Species})
Return the total count of genotypes from Genetics
for Species
in Node
of Network
.
GeneDrive.count_genotypes
— Methodcount_genotypes(node::Node, species::Type{<:Species})
Return the total count of genotypes from Genetics
for Species
in Node
.
GeneDrive.count_nodes
— Methodcount_nodes(network::Network)
Return a count of the nodes contained in the Network
object.
GeneDrive.count_nodes
— Methodcount_nodes(node::Node)
Return 1 (the count of the nodes contained in the Node
object).
GeneDrive.count_organisms
— Methodcount_organisms(network::Network, node::Symbol)
Count the species populating the specified Node
of Network
.
GeneDrive.count_organisms
— Methodcount_organisms(node::Node)
Count the species populating Node
.
GeneDrive.count_substages
— Methodcount_substages(network::Network, node::Symbol, species::Type{<:Species})
Return count of the total substages for Species
in the specified Node
of Network
.
GeneDrive.count_substages
— Methodcount_substages(node::Node, species::Type{<:Species}, stage::Type{<:LifeStage})
Return count of the substages in LifeStage
for Species
in Node
.
GeneDrive.count_substages
— Methodcount_substages(node::Node, species::Type{<:Species}, stage::Type{Female})
Return count of the substages for Species
in Node
. Specific to the Female
lifestage.
GeneDrive.count_substages
— Methodcount_substages(node::Node, species::Type{<:Species})
Return count of the total substages for Species
in Node
.
GeneDrive.count_temperature_scenarios
— Methodcount_temperature_scenarios(temperature_model::ScenarioTemperature)
Return the total count of temperature scenarios in ScenarioTemperature
or TimeSeriesTemperature
object.
GeneDrive.create_decision_model
— Methodcreate_decision_model(network::Network, tspan; node_strategy::Dict, species::Type{<:Species}=AedesAegypti,do_binary::Bool=false, optimizer=nothing)
Build mathematical program. Problem created as an NLP (dobinary=false) or MINLP (dobinary=true).
GeneDrive.create_decision_model
— Methodcreate_decision_model(node::Node, tspan; node_strategy::Dict, species::Type{<:Species}=AedesAegypti,do_binary::Bool=false, optimizer=nothing)
Build mathematical program. Problem created as an NLP (dobinary=false) or MINLP (dobinary=true). NB: Node
is recreated as a Network
object internally; this does not change the problem but is relevant for data exploration as it adds one index layer to the formatted results.
GeneDrive.format_decision_model_results
— Methodformat_decision_model_results(sol)
Return dictionary containing optimization model results. Indexed per node, organism, life stage, and genotype.
GeneDrive.format_dynamic_model_results
— Methodformat_dynamic_model_results(network::Network, sol)
Return dictionary containing ODE model results. Indexed per node, organism, life stage, and genotype.
GeneDrive.format_dynamic_model_results
— Methodformat_dynamic_model_results(node::Node, sol)
Return dictionary containing ODE model results. Indexed per organism, life stage, and genotype.
GeneDrive.get_density
— Methodget_density(node::Node, species::Type{<:Species}, life_stage::Type{<:LifeStage})
Return the density dependence model and parameterization for LifeStage
of Species
in Node
.
GeneDrive.get_duration
— Methodget_duration(node::Node, species::Type{<:Species}, life_stage::Type{<:LifeStage})
Return the temperature-sensitive duration (q_temperature_response
) for the LifeStage
of Species
in Node.
GeneDrive.get_exogenous_intervention
— Method function get_exogenous_intervention(inputs::ExogenousInputs, node::Node, organism, stage, gene)
Returns biological control intervention relevant to specified `Node`, `Organism`, `LifeStage`, and `Genotype`.
GeneDrive.get_exogenous_intervention
— Methodget_exogenous_intervention(inputs::ExogenousInputs, node::Node, organism, stage::Type{Female}, gene, female_index)
Return biological control intervention relevant to Female
.
GeneDrive.get_exogenous_temperature
— Methodget_exogenous_temperature(inputs::ExogenousInputs, node)
Return temperature relevant to Node
.
GeneDrive.get_genetics
— Methodget_genetics(network::Network, node::Symbol, species::Type{<:Species})
Return Genetics
data for Species
in Node
of Network
.
GeneDrive.get_genetics
— Methodget_genetics(node::Node, species::Type{<:Species})
Return Genetics
data for Species
in Node
.
GeneDrive.get_genotypes
— Methodget_genotypes(node::Node, species::Type{<:Species})
Return genotype data from Genetics
for Species
in Node
.
GeneDrive.get_homozygous_modified
— Methodget_homozygous_modified(network::Network, node::Node, species::Type{<:Species})
Return the index of the homozygous modified genotype in Genetics
for Species
in Node
of Network
.
GeneDrive.get_homozygous_modified
— Methodget_homozygous_modified(node::Node, species::Type{<:Species})
Return the index of the homozygous modified genotype in Genetics
for Species
in Node
.
GeneDrive.get_initial_temperature
— Methodget_initial_temperature(node::Node)
Return entry for the first index of values
in Temperature
of Node.
GeneDrive.get_lifestage
— Methodget_lifestage(node::Node, species::Type{<:Species}, life_stage::Type{<:LifeStage})
Return data for specified LifeStage
of Species
in Node
.
GeneDrive.get_lifestages
— Methodget_lifestages(node::Node, species::Type{<:Species})
Return all data for all LifeStage
s of Species
in Node
.
GeneDrive.get_location
— Methodget_location(network::Network)
Return the coordinates of Network
.
GeneDrive.get_location
— Methodget_location(node::Node)
Return the coordinates of Node
.
GeneDrive.get_migration
— Methodget_migration(network::Network, species::Type{<:Species})
Return the migration characterizing each genotype and Lifestage
for Species
in Network
.
GeneDrive.get_mortality
— Methodget_mortality(node::Node, species::Type{<:Species}, life_stage::Type{<:LifeStage})
Return the temperature-sensitive mortality (μ_temperature_response
) for the LifeStage
of Species
in Node.
GeneDrive.get_name
— Methodget_name(network::Network)
Return the name (symbol) of the Network
object.
GeneDrive.get_name
— Methodget_name(node::Node)
Return the name (symbol) of the Node
object.
GeneDrive.get_names
— Methodget_names(network::Network)
Return the names (symbols) of the nodes within the Network
object.
GeneDrive.get_nodes
— Methodget_nodes(network::Network)
Return the Node
object(s) contained in the Network
object.
GeneDrive.get_organisms
— Methodget_organisms(network::Network, node::Symbol)
Return vector of species populating the specified Node
of Network
.
GeneDrive.get_organisms
— Methodget_organisms(node::Node)
Return vector of species populating Node
.
GeneDrive.get_previous_lifestage
— Methodget_previous_lifestage(node::Node, species::Type{<:Species}, ::Stage{T}) where T <: LifeStage
Show LifeStage
dependency: return data for the LifeStage
previous to the specified LifeStage
of Species
in Node
.
GeneDrive.get_probability
— Methodget_probability(temperature_model::ScenarioTemperature)
Return the probability with which each temperature scenario occurs from ScenarioTemperature
or TimeSeriesTemperature
object.
GeneDrive.get_release_data
— Methodget_release_data(optimized_schedule::Vector{Float64})
Return re-formatted schedule of optimal release times and values produced by decision model, for simplified application in dynamic model.
GeneDrive.get_temperature
— Methodget_temperature(node::Node)
Return Temperature
for Node
. Object contains type
and values
.
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::AdultMortalityAbiodun, ::Float64)
Return q_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Male, Female. Source: Abiodun et al (2016).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::AdultMortalityMoustaid, ::Float64)
Return μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Male, Female. Source: El Moustaid et al (2019).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::AdultMortalityRossi, ::Float64)
Return μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Male, Female. Source: Rossi et al (2014).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::EggDurationAbiodun, ::Float64)
Return q_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Egg. Source: Abiodun et al (2016).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::EggDurationMoustaid, ::Float64)
Return q_temperature_response
. Species
: AedesAegypti, LifeStage
: Egg. Source: El Moustaid et al (2019).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::EggDurationRossi, ::Float64)
Return q_temperature_response
. Species
: AedesAegypti, LifeStage
: Egg. Source: Rossi et al (2014).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::EggMortalityAbiodun, ::Float64)
Return q_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Egg. Source: Abiodun et al (2016).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::EggMortalityMoustaid, duration::Float64)
Return μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Egg. Source: El Moustaid et al (2019).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::EggMortalityRossi, ::Float64)
Return μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Egg. Source: Rossi et al (2014).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::LarvaDurationAbiodun, ::Float64)
Return q_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Larva. Source: Abiodun et al (2016).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::LarvaDurationMoustaid, ::Float64)
Return q_temperature_response
. Species
: AedesAegypti, LifeStage
: Larva. Source: El Moustaid et al (2019).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::LarvaDurationRossi, ::Float64)
Return q_temperature_response
. Species
: AedesAegypti, LifeStage
: Larva. Source: Rossi et al (2014).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::LarvaMortalityAbiodun, ::Float64)
Return q_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Larva. Source: Abiodun et al (2016).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::LarvaMortalityMoustaid, duration::Float64)
Return μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Larva. Source: El Moustaid et al (2019).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::LarvaMortalityRossi, ::Float64)
Return μ_temperature_response
. Species
: AedesAegypti, LifeStage
:, larval stage. Source: Rossi et al (2014).
GeneDrive.get_temperature_response
— Methodget_temperature_response(::Float64, response::NoResponse, ::Float64) = response.baseline_value
Return NoResponse
data (model without temperature response).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::PupaDurationAbiodun, ::Float64)
Return q_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Pupa. Source: Abiodun et al (2016).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::PupaDurationMoustaid, ::Float64)
Return q_temperature_response
. Species
: AedesAegypti, LifeStage
: Pupa. Source: El Moustaid et al (2019).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::PupaDurationRossi, ::Float64)
Return q_temperature_response
. Species
: AedesAegypti, LifeStage
: Pupa. Source: Rossi et al (2014) and Poletti et al (2011) Table 1.
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::PupaMortalityAbiodun, ::Float64)
Return q_temperature_response
. Species
: AnophelesGambiae, LifeStage
: Pupa. Source: Abiodun et al (2016).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::PupaMortalityMoustaid, duration::Float64)
Return μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Pupa. Source: El Moustaid et al (2019).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::PupaMortalityRossi, ::Float64)
Return μ_temperature_response
. Species
: AedesAegypti, LifeStage
: Pupa. Source: Rossi et al (2014).
GeneDrive.get_temperature_response
— Methodget_temperature_response(ctemp::Float64, response::TemperatureResponse)
Return TemperatureResponse
data (model with temperature response).
GeneDrive.get_temperature_scenarios
— Methodget_temperature_scenarios(temperature_model::ScenarioTemperature)
Return the values of all temperature scenarios in ScenarioTemperature
or TimeSeriesTemperature
object.
GeneDrive.get_temperature_value
— Methodget_temperature_value(temperature_model::ConstantTemperature, temp_value_from_inputs::Float64, t)
Return value of temperature in °C for specifed time step. Accounts for perturbations to baseline temperature model where applicable.
GeneDrive.get_temperature_value
— Methodget_temperature_value(temperature_model::ScenarioTemperature, temp_value_from_inputs::Float64, t)
Return value of temperature in °C for selected scenario and specifed time step. Perturbations to baseline temperature, where applicable, should be directly added to time series prior to running model.
GeneDrive.get_temperature_value
— Methodget_temperature_value(temperature_model::SinusoidalTemperature, temp_value_from_inputs::Float64, t)
Return value of temperature in °C for specifed time step. Accounts for perturbations to baseline temperature model where applicable.
GeneDrive.get_temperature_value
— Methodget_temperature_value(temperature_model::TimeSeriesTemperature, temp_value_from_inputs::Float64, t)
Return value of temperature in °C for specifed time step. Perturbations to baseline temperature, where applicable, should be directly added to time series prior to running model.
GeneDrive.get_wildtype
— Methodget_wildtype(network::Network, node::Node, species::Type{<:Species})
Return the index of the wildtype genotype in Genetics
for Species
in Node
of Network
.
GeneDrive.get_wildtype
— Methodget_wildtype(node::Node, species::Type{<:Species})
Return the index of the wildtype genotype in Genetics
for Species
in Node
.
GeneDrive.init_network!
— Methodinit_network!(network::Network)
Return initialized Network
.
GeneDrive.init_node!
— Methodinit_node!(node::Node)
Return initialized Node
.
GeneDrive.make_organisms
— Methodmake_organisms(species::Type{<:Species},genetics::Genetics,stages::DataStructures.OrderedDict)
Return Organism
object.
GeneDrive.perturb_temperature_timeseries!
— Methodperturb_temperature_timeseries(current_temperature::TimeSeriesTemperature, perturbation)
Alter daily values across entire temperature timeseries by the size of perturbation
input. Perturbation may be positive or negative.
GeneDrive.plot_decision_mcr_females
— Methodplot_decision_mcr_females(sol)
Return visualization of adult female population dynamics across all genotypes.
GeneDrive.plot_decision_mendelian_females
— Methodplot_decision_mendelian_females(sol)
Return visualization of adult female population dynamics across all genotypes.
GeneDrive.plot_decision_ridl_females
— Methodplot_decision_ridl_females(sol)
Return visualization of adult female population dynamics across all genotypes.
GeneDrive.plot_decision_wolbachia_females
— Methodplot_decision_wolbachia_females(sol)
Return visualization of adult female population dynamics across all genotypes.
GeneDrive.plot_dynamic_mcr_females
— Methodplot_dynamic_mcr_females(node::Node, sol)
Return visualization of adult female population dynamics across all genotypes.
GeneDrive.plot_dynamic_mendelian_females
— Methodplot_dynamic_mendelian_females(node::Node, sol)
Return visualization of adult female population dynamics across all genotypes.
GeneDrive.plot_dynamic_ridl_females
— Methodplot_dynamic_ridl_females(node::Node, sol)
Return visualization of adult female population dynamics across all genotypes.
GeneDrive.plot_dynamic_wolbachia_females
— Methodplot_dynamic_wolbachia_females(node::Node, sol)
Return visualization of adult female population dynamics across all genotypes.
GeneDrive.population_model_network
— Methodpopulation_model_network(du, u, (network, inputs), t)
Solve network implementation of dynamic population model.
GeneDrive.population_model_node
— Methodpopulation_model_node(du, u, (network, inputs), t)
Solve node implementation of dynamic population model.
GeneDrive.set_scenario!
— Methodset_scenario!(data::ScenarioTemperature, selected_scenario::Int)
Update the selected_scenario
of Temperature
for ScenarioTemperature
in Node
.
GeneDrive.set_scenario!
— Methodset_scenario!(data::ScenarioTemperature, selected_scenario::Int)
Update the selected_scenario
of Temperature
for ScenarioTemperature
.
GeneDrive.solve_decision_model
— Functionsolve_decision_model(model::JuMP.Model, objective_function::Nothing=nothing; kwargs...)
Solve mathematical program using default objective function @objective(model, Min, 0)
. This permits comparison to dynamic population model output.
GeneDrive.solve_dynamic_model
— Methodsolve_dynamic_model(network::Network, algorithm, tspan)
Return ODE model solution for network problem with no releases.
GeneDrive.solve_dynamic_model
— Methodsolve_dynamic_model(network::Network, releases::Union{Vector{Release}, Vector{ProportionalRelease}}, algorithm, tspan)
Return ODE model solution for network problem with releases.
GeneDrive.solve_dynamic_model
— Methodsolve_dynamic_model(network::Network, releases::Union{Vector{Release},Vector{ProportionalRelease}}, shocks::Vector{TemperatureShockData}, algorithm, tspan)
Return ODE model solution for network problem with releases and temperature shocks.
GeneDrive.solve_dynamic_model
— Methodsolve_dynamic_model(network::Network, shocks::Vector{TemperatureShockData}, algorithm, tspan)
Return ODE model solution for network problem with temperature shocks.
GeneDrive.solve_dynamic_model
— Methodsolve_dynamic_model(node::Node, algorithm, tspan)
Return ODE model solution for single node problem with no releases.
GeneDrive.solve_dynamic_model
— Methodsolve_dynamic_model(node::Node, shocks::TemperatureShockData, algorithm, tspan)
Return ODE model solution for single node problem with temperature shocks.
GeneDrive.solve_dynamic_model
— Methodsolve_dynamic_model(node::Node, releases::Union{Vector{Release},Vector{ProportionalRelease}}, algorithm, tspan)
Return ODE model solution for single node problem with releases.
GeneDrive.solve_dynamic_model
— Methodsolve_dynamic_model(node::Node, releases::Union{Vector{Release},Vector{ProportionalRelease}}, shocks::TemperatureShockData, algorithm, tspan)
Return ODE model solution for single node problem with releases and temperature shocks.
GeneDrive.solve_scenarios_dynamic_model
— Methodsolve_scenarios_dynamic_model(network::Network, algorithm, tspan, scenarios_of_interest::Vector{Int})
Return ODE model solution for network problem with scenarions and no releases.
GeneDrive.solve_scenarios_dynamic_model
— Methodsolve_scenarios_dynamic_model(network::Network, releases, algorithm, tspan, scenarios_of_interest::Vector{Int})
Return ODE model solution for node problem with scenarios and releases.
GeneDrive.solve_scenarios_dynamic_model
— Methodsolve_scenarios_dynamic_model(node::Node, algorithm, tspan, scenarios_of_interest::Vector{Int})
Return ODE model solution for node problem with scenarios and no releases.
GeneDrive.solve_scenarios_dynamic_model
— Methodsolve_scenarios_dynamic_model(node::Node, releases, algorithm, tspan, scenarios_of_interest::Vector{Int})
Return ODE model solution for node problem with scenarios and releases.
GeneDrive.temperature_effect
— Methodtemperature_effect(ctemp::Float64, stage)
Return effect of temperature on organism vital rates (mortality, duration = μ_temperature_response
, q_temperature_response
).
GeneDrive.update_density!
— Methodupdate_density!(node::Node, species::Type{<:Species}, ::Type{T}; new_density::Density) where T <: LifeStage
Update both the functional form and parameterization of the density dependence model for LifeStage
of Species
in Node
.
GeneDrive.update_density!
— Methodupdate_density!(stages::DataStructures.OrderedDict,lifestage::Type{T},new_density::Density) where {T <: LifeStage}
Update both the functional form and parameterization of the density dependence model for LifeStage
.
GeneDrive.update_density_model
— Methodupdate_density_model(node::Node, species::Type{<:Species}, ::Type{T}; new_density_model::Density) where T <: LifeStage
Update the functional form of the density dependence model for LifeStage
of Species
in Node
.
GeneDrive.update_density_parameter
— Methodupdate_density_parameter(node::Node, species::Type{<:Species}, ::Type{T}; new_param_value::Float64) where T <: LifeStage
Update the parameterization of the density dependence model for LifeStage
of Species
in Node
.
GeneDrive.update_duration
— Methodupdate_duration(node::Node, species::Type{<:Species}, life_stage::Type{<:LifeStage}, new_q)
Update the temperature-sensitive duration (q_temperature_response
) for the LifeStage
of Species
in Node.
GeneDrive.update_egg_duration
— Methodupdate_egg_duration(stages::DataStructures.OrderedDict, vital_rate::Float64)
Return updated duration for Egg
stage. Note: Exclusively applicable to NoResponse
temperature type.
GeneDrive.update_egg_mortality
— Methodupdate_egg_mortality(stages::DataStructures.OrderedDict, vital_rate::Float64)
Return updated mortality for Egg
stage. Note: Exclusively applicable to NoResponse
temperature type.
GeneDrive.update_female_mortality
— Methodupdate_female_mortality(stages::DataStructures.OrderedDict, vital_rate::Float64)
Return updated mortality for Female
stage. Note: Exclusively applicable to NoResponse
temperature type.
GeneDrive.update_genetics
— Methodupdate_genetics(node::Node, species::Type{<:Species}, new_genetics)
Update Genetics
data for Species
in Node
.
GeneDrive.update_genetics_S
— Methodupdate_genetics_S(node::Node, species::Type{<:Species}, new_sigma::Array{Float64,1})
Update S
data in Genetics
for Species
in Node
.
GeneDrive.update_genetics_Β
— Methodupdate_genetics_Β(node::Node, species::Type{<:Species}, new_beta::Array{Float64,1})
Update Β
data in Genetics
for Species
in Node
.
GeneDrive.update_genetics_Η
— Methodupdate_genetics_Η(gene_data, new_eta::Array{Float64,1})
Update Η
data in Genetics
. Helper function.
GeneDrive.update_genetics_Η
— Methodupdate_genetics_Η(node::Node, species::Type{<:Species}, new_eta::Array{Float64,1})
Update Η
data in Genetics
for Species
in Node
.
GeneDrive.update_genetics_Ω
— Methodupdate_genetics_Ω(gene_data, new_omega::Array{Float64,1})
Update Ω
data in Genetics
. Helper function.
GeneDrive.update_genetics_Ω
— Methodupdate_genetics_Ω(node::Node, species::Type{<:Species}, new_omega::Array{Float64,1})
Update Ω
data in Genetics
for Species
in Node
.
GeneDrive.update_larva_duration
— Methodupdate_larva_duration(stages::DataStructures.OrderedDict, vital_rate::Float64)
Return updated duration for Larva
stage. Note: Exclusively applicable to NoResponse
temperature type.
GeneDrive.update_larva_mortality
— Methodupdate_larva_mortality(stages::DataStructures.OrderedDict, vital_rate::Float64)
Return updated mortality for Larva
stage. Note: Exclusively applicable to NoResponse
temperature type.
GeneDrive.update_male_mortality
— Methodupdate_male_mortality(stages::DataStructures.OrderedDict, vital_rate::Float64)
Return updated mortality for Male
stage. Note: Exclusively applicable to NoResponse
temperature type.
GeneDrive.update_migration
— Methodupdate_migration(network::Network, species::Type{<:Species}, new_migration)
Update the migration characterizing each genotype and Lifestage
for Species
in Network
.
GeneDrive.update_mortality
— Methodupdate_mortality(node::Node, species::Type{<:Species}, life_stage::Type{<:LifeStage}, new_μ)
Update the temperature-sensitive mortality (μ_temperature_response
) for the LifeStage
of Species
in Node.
GeneDrive.update_organism
— Methodupdate_organism(network::Network, node::Symbol, new_species)
Update the species populating the specified Node
of Network
.
GeneDrive.update_organism
— Methodupdate_organism(node::Node, new_species)
Update the species populating Node
.
GeneDrive.update_population_size
— Methodupdate_population_size(stages::DataStructures, Stage}, new_popsize::Int64)
Return updated population size. Note: new_popsize
argument refers specifically to the Female population; if e.g. new_popsize = 500, the full adult population (Females and Males) will be 500*2.
GeneDrive.update_pupa_duration
— Methodupdate_pupa_duration(stages::DataStructures.OrderedDict, vital_rate::Float64)
Return updated duration for Pupa
stage. Note: Exclusively applicable to NoResponse
temperature type.
GeneDrive.update_pupa_mortality
— Methodupdate_pupa_mortality(stages::DataStructures.OrderedDict, vital_rate::Float64)
Return updated mortality for Pupa
stage. Note: Exclusively applicable to NoResponse
temperature type.
GeneDrive.update_temperature!
— Methodupdate_temperature!(node::Node, temp_type::Type{<:ConstantTemperature}, new_temperature::Float64)
Update the values
of ConstantTemperature
for Node
.
GeneDrive.update_temperature!
— Methodupdate_temperature!(node::Node, temp_type::Type{<:SinusoidalTemperature}, new_temperature::Vector{Float64})
Update the values
of Temperature
for SinusoidalTemperature
in Node
.
GeneDrive.update_temperature!
— Methodupdate_temperature!(node::Node, temp_type::Type{<:TimeSeriesTemperature}, new_temperature::Vector{Float64})
Update the values
of Temperature
for TimeSeriesTemperature
in Node
.